VISDB Viral Integration Site DataBase

VIS ID

TVIS30003277

Fusion event

HIV-DSN1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr20

Cytoband

q11.23

Reference genome

Start

End

35384542/36756139 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-193b-3p ; hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-4698 ; hsa-mir-6807-5p ; hsa-mir-3157-5p ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-1287-5p ; hsa-mir-3135b ; hsa-mir-6778-3p ; hsa-mir-6839-5p ; hsa-mir-378j ; hsa-mir-150-5p ; hsa-mir-186-3p ; hsa-mir-3934-5p ; hsa-mir-6504-3p ; hsa-mir-552-3p ; hsa-mir-374b-5p ; hsa-mir-374a-5p ; hsa-mir-340-5p ; hsa-mir-655-3p ; hsa-mir-374c-5p ; hsa-mir-455-5p ; hsa-mir-5692c ; hsa-mir-5692b ; hsa-mir-369-3p ; hsa-mir-208b-5p ; hsa-mir-5683 ; hsa-mir-208a-5p ; hsa-mir-590-3p ; hsa-mir-944 ; hsa-mir-7-2-3p ; hsa-mir-7-1-3p ; hsa-mir-7977 ; hsa-mir-1295a ; hsa-mir-5704 ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-564 ; hsa-mir-4755-3p ; hsa-mir-4670-3p ; hsa-mir-4673 ; hsa-mir-4645-5p ; hsa-mir-6715b-5p ; hsa-mir-4269 ; hsa-mir-15a-3p ; hsa-mir-4717-5p ; hsa-mir-3622a-5p ; hsa-mir-4763-5p ; hsa-mir-642a-5p ; hsa-mir-4290 ; hsa-mir-2276-5p ; hsa-mir-6892-3p ; hsa-mir-4687-5p ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-6741-5p ; hsa-mir-6736-5p ; hsa-mir-4701-3p ; hsa-mir-1262 ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-4483 ; hsa-mir-1293 ; hsa-mir-6766-5p ; hsa-mir-6756-5p ; hsa-mir-6745 ; hsa-mir-363-5p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-3975 ; hsa-mir-4259 ; hsa-mir-382-5p ; hsa-mir-495-5p ; hsa-mir-498 ; hsa-mir-4279 ; hsa-mir-1976 ; hsa-mir-6862-3p ; hsa-mir-6784-3p ; hsa-mir-1281 ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-3927-5p ; hsa-mir-4485-5p ; hsa-mir-4667-3p ; hsa-mir-4532 ; hsa-mir-1247-3p ; hsa-mir-3620-3p ; hsa-mir-6865-3p ; hsa-mir-5571-5p ; hsa-mir-3653-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-383-3p ; hsa-mir-1827 ; hsa-mir-183-5p ; hsa-mir-1910-3p ; hsa-mir-2467-3p ; hsa-mir-3612 ; hsa-mir-3650 ; hsa-mir-377-5p ; hsa-mir-4257 ; hsa-mir-4327 ; hsa-mir-4497 ; hsa-mir-4537 ; hsa-mir-455-3p ; hsa-mir-4722-5p ; hsa-mir-4768-3p ; hsa-mir-4790-3p ; hsa-mir-5186 ; hsa-mir-5197-5p ; hsa-mir-5690 ; hsa-mir-605-5p ; hsa-mir-6086 ; hsa-mir-6499-3p ; hsa-mir-650 ; hsa-mir-6511a-5p ; hsa-mir-6516-5p ; hsa-mir-6746-5p ; hsa-mir-6771-5p ; hsa-mir-6808-5p ; hsa-mir-6893-5p ; hsa-mir-940 ; hsa-mir-3119 ; hsa-mir-4775 ; hsa-mir-8055

Nearest miRNA

hsa-mir-103a-2/Upstream/1302042; hsa-mir-1-1/Downstream/1760424;

Nearest TSS

Nearest CpG islands

None/Target, chr20-CpG: 39/Upstream/9888, chr20-CpG: 72/Downstream/17283

Upstream sequence

ctcaggtctcggctcactgcaacctctgcctcccgggttcaagcaattttcctgcctcagcctcctgagtagctgggatttcaggcacctgccaccatgc

Downstream sequence

ccagctaattttttgtatttttagtagagacgaggtttcaccatgttggccaggctggtctcgaactcctgaacttgtgatctgcccgcttcggcctccc