Basic Information
VIS ID
TVIS30003287
Fusion event
HIV-PLCG1-AS1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr20
Cytoband
q12
Reference genome
GRCh37/hg19
Start
39739287/41110647 (Hg38)
End
39739287/41110647 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
PLCG1-AS1
Nearest miRNA
hsa-mir-103a-2/Upstream/2594015; hsa-mir-1-1/Downstream/58376;
Nearest TSS
ENST00000382410/Upstream/81829; ENST00000490253/Downstream/26313;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/80875, chr20-CpG: 175/Downstream/25942
Upstream sequence
ATCCAGATCCTGATTCCACCCAACCACTCTGCTGAATGGATAGCAGCTATATTAGAGAGACAATATAGTGGGCCTACTAGTTTTAAAAAGTCATCCAAAG
Downstream sequence
AATGTCATCTACAATCAGTTAAATTAGATTTTTACCCATTACTGAAGTGTGATTGAATTAGGGAAAGAGGAGAGGTGGTCAAAGGCAGCCTTCTCCAGTG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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