Basic Information
VIS ID
TVIS30003290
Fusion event
HIV-ADA integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr20
Cytoband
q13.12
Reference genome
GRCh37/hg19
Start
43264818/44636177 (Hg38)
End
43264818/44636177 (Hg38)
Orient
+
Location type
Intronic
Target gene
ADA
miRNAs that regulate target gene
hsa-mir-98-5p ; hsa-mir-484 ; hsa-mir-140-5p
Nearest miRNA
hsa-mir-103a-2/Upstream/227974; hsa-mir-1-1/Downstream/789333;
Nearest TSS
ENST00000382410/Upstream/9686; ENST00000497421/Downstream/15484;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/104001, chr20-CpG: 83/Downstream/15243
Upstream sequence
TCACAGTCCCACTTCTGGCCTGGAGCTGGCTTGATTCCCACAGGGAGACAGGAAGGAACAGTGACCCTGGAATTCCCCAGGGGCCTCTGGGTGGAGCTGG
Downstream sequence
GGACCCCACTCAAATCCCAGGGAGAGAGGGCTCTTCTGTATGGACTTACCTGCCATAGTATAAGATGGTTTCAGGCTTGATGGATCCGTCTAGGTGGACA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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