VISDB Viral Integration Site DataBase

VIS ID

TVIS30003309

Fusion event

HIV-CSE1L integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr20

Cytoband

q13.13

Reference genome

Start

End

47675367/49058830 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-137 ; hsa-mir-155-5p ; hsa-mir-130b-5p ; hsa-mir-320a ; hsa-mir-34a-5p ; hsa-mir-5590-3p ; hsa-mir-142-5p ; hsa-mir-5692a ; hsa-mir-548l ; hsa-mir-8054 ; hsa-mir-548k ; hsa-mir-548av-5p ; hsa-mir-559 ; hsa-mir-548y ; hsa-mir-548w ; hsa-mir-548o-5p ; hsa-mir-548i ; hsa-mir-548j-5p ; hsa-mir-548h-5p ; hsa-mir-548d-5p ; hsa-mir-548c-5p ; hsa-mir-548bb-5p ; hsa-mir-548b-5p ; hsa-mir-548ay-5p ; hsa-mir-548au-5p ; hsa-mir-548as-5p ; hsa-mir-548ar-5p ; hsa-mir-548aq-5p ; hsa-mir-548ap-5p ; hsa-mir-548am-5p ; hsa-mir-548ak ; hsa-mir-548ae-5p ; hsa-mir-548ad-5p ; hsa-mir-548ab ; hsa-mir-548a-5p ; hsa-mir-3671 ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-6827-3p ; hsa-mir-340-3p ; hsa-mir-7703 ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-421 ; hsa-mir-1227-3p ; hsa-mir-505-3p ; hsa-mir-4252 ; hsa-mir-4793-3p ; hsa-mir-1273g-3p ; hsa-mir-4709-5p ; hsa-mir-938 ; hsa-mir-129-2-3p ; hsa-mir-129-1-3p ; hsa-mir-1252-3p ; hsa-mir-3646 ; hsa-mir-3065-5p ; hsa-mir-3529-3p ; hsa-mir-3165 ; hsa-mir-3614-5p ; hsa-mir-3665 ; hsa-mir-3672 ; hsa-mir-4433a-3p ; hsa-mir-4459 ; hsa-mir-4736 ; hsa-mir-6089 ; hsa-mir-6500-3p ; hsa-mir-6864-3p

Nearest miRNA

hsa-mir-103a-2/Upstream/1891772; hsa-mir-1-1/Downstream/805029;

Nearest TSS

Nearest CpG islands

None/Target, chr20-CpG: 39/Upstream/11918, chr20-CpG: 83/Downstream/128986

Upstream sequence

TTTATTTGGCATCTTCTGGGATTAAAAAGTACTAGTTTTCGGATAAAAAGTACTGACATGTTTAGAATGCTTTGTCTTTGACCTTTTCCAAAATACCCAC

Downstream sequence

TTAAAACATGCCTGCTTTAggccggatgcggtggctcacacctgtaatcccagcactttgggaggctgaggcaggcggatcacgaggtcaggagatggag