VISDB Viral Integration Site DataBase

VIS ID

TVIS30003311

Fusion event

HIV-PTPN1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr20

Cytoband

q13.13

Reference genome

Start

End

49132948/50516411 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-210-3p ; hsa-mir-122-5p ; hsa-mir-362-3p ; hsa-mir-375 ; hsa-mir-1-3p ; hsa-mir-26b-5p ; hsa-mir-1293 ; hsa-mir-194-3p ; hsa-mir-3150b-3p ; hsa-mir-363-5p ; hsa-mir-3689d ; hsa-mir-3973 ; hsa-mir-4483 ; hsa-mir-4784 ; hsa-mir-548a-5p ; hsa-mir-548ab ; hsa-mir-548ad-5p ; hsa-mir-548ae-5p ; hsa-mir-548ak ; hsa-mir-548am-5p ; hsa-mir-548ap-5p ; hsa-mir-548aq-5p ; hsa-mir-548ar-5p ; hsa-mir-548as-5p ; hsa-mir-548au-5p ; hsa-mir-548ay-5p ; hsa-mir-548b-5p ; hsa-mir-548bb-5p ; hsa-mir-548c-5p ; hsa-mir-548d-5p ; hsa-mir-548h-5p ; hsa-mir-548i ; hsa-mir-548j-5p ; hsa-mir-548o-5p ; hsa-mir-548w ; hsa-mir-548y ; hsa-mir-559 ; hsa-mir-6134 ; hsa-mir-6745 ; hsa-mir-6748-5p ; hsa-mir-6756-5p ; hsa-mir-6766-5p ; hsa-mir-6851-5p ; hsa-mir-6880-5p ; hsa-mir-7847-3p

Nearest miRNA

hsa-mir-103a-2/Upstream/652458; hsa-mir-1-1/Downstream/69375;

Nearest TSS

Nearest CpG islands

None/Target, chr20-CpG: 39/Upstream/5513, chr20-CpG: 23/Downstream/93153

Nearest cancer related gene

PTPN1(TSG, No orient, 0)

Upstream sequence

TGCTTTTTCTAGTGTCCCCTGTGTCTGGGTATAgttgcagtctcagctgtcatactaacagtgctgagtgagtcccttactttctttgggttttggtttc

Downstream sequence

tcccttgtaaaaatgatcctggactaactgatcattaagttcAGGTCAAGTAATAAAAATCCTTAATGTACTCACAAATACAATTTAATGTTCCTGAATA