Basic Information
VIS ID
TVIS30003314
Fusion event
HIV-ADNP integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr20
Cytoband
q13.13
Reference genome
GRCh37/hg19
Start
49522122/50905585 (Hg38)
End
49522122/50905585 (Hg38)
Orient
-
Location type
Intronic
Target gene
ADNP
miRNAs that regulate target gene
hsa-mir-34a-5p ; hsa-mir-26b-5p ; hsa-mir-21-5p ; hsa-mir-328-3p ; hsa-let-7b-5p
Nearest miRNA
hsa-mir-103a-2/Upstream/290800; hsa-mir-1-1/Downstream/547320;
Nearest TSS
ENST00000382410/Upstream/27; ENST00000614698/Downstream/4206;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/64780, chr20-CpG: 143/Downstream/24946
Upstream sequence
TCAACGTTAACTATAAAAAAATGGAAAATAAAAGGAGAAAGAGTGAAATCTACCAAAATCAAAGAGTAACCCCTAGAAATTTTGAAACTGGGTACGTTAC
Downstream sequence
TCTAACTTAGAAGTCTCAAAATATTCTATATGAAGTACCAAAGTCTAATTGGGGCCGAAAATGAAAAGTATTTCAAAAAAACCTTCTAGGCCTTATCATA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate