Basic Information
VIS ID
TVIS30003315
Fusion event
HIV-ADNP-AS1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr20
Cytoband
q13.13
Reference genome
GRCh37/hg19
Start
49557974/50941437 (Hg38)
End
49557974/50941437 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
ADNP-AS1
Nearest miRNA
hsa-mir-103a-2/Upstream/326652; hsa-mir-1-1/Downstream/511468;
Nearest TSS
ENST00000382410/Upstream/10016; ENST00000244051/Downstream/4424;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/9449, chr20-CpG: 115/Downstream/16842
Upstream sequence
tcgtattatatatattcatatacatatatattcatattatatatattcatatatatattcatattatatatatatattcatattatatatatTAgctggg
Downstream sequence
catggtggtacgtgcctgcagtcccagctactgggaagctgaggcaggcagatcacctgagctcaggagttcgagggcaacctgggccacatggtgaaac
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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