Basic Information
VIS ID
TVIS30003325
Fusion event
HIV-MHENCR integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr20
Cytoband
q13.33
Reference genome
GRCh37/hg19
Start
62259803/63628450 (Hg38)
End
62259803/63628450 (Hg38)
Orient
+
Location type
ncRNA_exonic
Target gene
MHENCR
Nearest miRNA
hsa-mir-1-1/Upstream/341584; hsa-mir-1914/Downstream/290999;
Nearest TSS
ENST00000382410/Upstream/1200; ENST00000469728/Downstream/23944;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/327, chr20-CpG: 136/Downstream/12488
Upstream sequence
GTCGGAAAATAGGAAGCAGGTGCTCGCTTGGATGGAACCCTGACCCTGTGCTCACACTTGTAGGAGGAGGGCTCTGCAGGCCGCCTCCCGGAACGGGAGG
Downstream sequence
TTCCCAAGCCACTGCACTTCGGAGGGGCTGTAATTAGAGTTGCACATTCATTCAGTTCCCAGTAAAGTAGAACGTGCTCCAGCCAGTGAGGAAAAGGTGT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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