Basic Information
VIS ID
TVIS30003326
Fusion event
HIV-MHENCR integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr20
Cytoband
q13.33
Reference genome
GRCh37/hg19
Start
62260091/63628738 (Hg38)
End
62260091/63628738 (Hg38)
Orient
-
Location type
ncRNA_exonic
Target gene
MHENCR
Nearest miRNA
hsa-mir-1-1/Upstream/341872; hsa-mir-1914/Downstream/290711;
Nearest TSS
ENST00000382410/Upstream/1488; ENST00000469728/Downstream/23656;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/615, chr20-CpG: 136/Downstream/12200
Upstream sequence
aggagttcaagaccagcctgggcaacagagcctgtctctggggaagaataaaaaaaaaaATTGAGCCTTTGTCAGTGCTACTATTTTATTATCTGGTAAA
Downstream sequence
TATGAGAGGGTTCACGCGGTCTATGTGTGTCATTTATCTGAGTTTGCCTATCGTCACGTTTTGGAAATAAATGTCAATAAAGTCGAAGAGGAGTGCTGAG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate