Basic Information
VIS ID
TVIS30003335
Fusion event
HIV-ZGPAT integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr20
Cytoband
q13.33
Reference genome
GRCh37/hg19
Start
62351796/63720444 (Hg38)
End
62351796/63720444 (Hg38)
Orient
+
Location type
Intronic
Target gene
ZGPAT
Nearest miRNA
hsa-mir-1-1/Upstream/433578; hsa-mir-1914/Downstream/199005;
Nearest TSS
ENST00000382410/Upstream/11355; ENST00000484569/Downstream/9933;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/11522, chr20-CpG: 22/Downstream/14453
Upstream sequence
catggttttgccgtgttagccaggatggtctcgatctcgtgacctcatgatcctcctgcctcggcctcccaaagtgctggaattacaggtgtgagccacc
Downstream sequence
gcgcccagccTAttttttattttttgagacaaagtctccctctctcacccaggctgtagtgcagtggcacaaccctggcacactgcagccttaaccgtcc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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