Basic Information
VIS ID
TVIS30003344
Fusion event
HIV-chr21 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr21
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
15816310/14443989 (Hg38)
End
15816310/14443989 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA21A
Nearest miRNA
hsa-mir-10396a/Upstream/719715; hsa-let-7c/Downstream/2095100;
Nearest TSS
ENST00000624081/Upstream/60505; ENST00000449214/Downstream/56617;
Nearest CpG islands
None/Target, chr21-CpG: 261/Upstream/60224, chr21-CpG: 171/Downstream/620186
Nearby gene
SAMSN1(No orient, 41239)
Upstream sequence
TGATTTTGTTCAGTTTTTTCGAAAATCCTCCTGAGTCCTCTGTGGTCAGGGTTAATGACATATTTGCAGTTCTGCCTATTAGAGGCCTTGAGAAATTTTA
Downstream sequence
TCTTGTTGTTGTGACCTGAGTGCAGACTCTTCTGAAGTACCTATGCTTTCTTCTTTGCTCATTACTGAAACCTGAAAACAACAAGGCTGACAGTAGAAAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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