Basic Information
VIS ID
TVIS30003384
Fusion event
HIV-HORMAD2-AS1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr22
Cytoband
q12.2
Reference genome
GRCh37/hg19
Start
30407218/30011229 (Hg38)
End
30407218/30011229 (Hg38)
Orient
+
Location type
ncRNA_intronic
Fragile sites / regions
FRA22B
Target gene
HORMAD2-AS1
Nearest miRNA
hsa-mir-1286/Upstream/4116; hsa-let-7a-3/Downstream/720328;
Nearest TSS
ENST00000624155/Upstream/7334; ENST00000492087/Downstream/6454;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/127360, chr22-CpG: 50/Downstream/68794
Upstream sequence
GGCCTTTACAGCCTTCCCACAGTCCCCTGACAGAAATGTTTATTTCTTCCTCTGACTCAGTGTTTGAAAGACTTGACTTGTGATCTTAACTACAAATCTG
Downstream sequence
ATCACATTTGGGAAAAATCAACTCCTTTTTAGGGATTGGGAGGGGTGAGGGAAAGCACAAGAAACAAAATGCAACAGAGTTTAAAAAGCAAGTGTGATTA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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