Basic Information
VIS ID
TVIS30003388
Fusion event
HIV-SFI1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr22
Cytoband
q12.2
Reference genome
GRCh37/hg19
Start
31947676/31551690 (Hg38)
End
31947676/31551690 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA22B
Target gene
SFI1
miRNAs that regulate target gene
hsa-mir-1-3p
Nearest miRNA
hsa-mir-1286/Upstream/391571; hsa-let-7a-3/Downstream/69777;
Nearest TSS
ENST00000624155/Upstream/22870; ENST00000484806/Downstream/21073;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/54579, chr22-CpG: 53/Downstream/78621
Upstream sequence
agctaaatttttgtatttttggtagagatgggcttttgccatgttgcccaggctggtttcaaactcctggactaaagcaatccacctgcctcgctctccc
Downstream sequence
aaagtgctggcaatacaggtgtgagccactgtgcctggccTtaagtttaattctataagaaactggcaaggttttttatcatggctgtgccattttgcat
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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