Basic Information
VIS ID
TVIS30003390
Fusion event
HIV-APOL3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr22
Cytoband
q12.3
Reference genome
GRCh37/hg19
Start
36547473/36151425 (Hg38)
End
36547473/36151425 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA22A
Target gene
APOL3
Nearest miRNA
hsa-mir-1286/Upstream/814626; hsa-let-7a-3/Downstream/135422;
Nearest TSS
ENST00000624155/Upstream/2299; ENST00000475519/Downstream/5460;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/85062, chr22-CpG: 24/Downstream/170980
Upstream sequence
acaagtaaaaaatgagtccagaagaaatggatgattgcgaaaatagaaaataatttttaaaaactcaaacccatgtcctcagggacataaaaatgtttta
Downstream sequence
ttcataaatgagaacattatgtactgaaaaggaacaaagatgatggaacaaaaaagacttcttgagaattaaaaggtgattgagaaaataaacaactcta
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate