VISDB Viral Integration Site DataBase

VIS ID

TVIS30003410

Fusion event

HIV-ENTHD1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr22

Cytoband

q13.1

Reference genome

Start

End

40235150/39839145 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-4732-5p ; hsa-mir-3175 ; hsa-mir-8085 ; hsa-mir-6731-5p ; hsa-mir-6722-3p ; hsa-mir-6077 ; hsa-mir-1909-3p ; hsa-mir-6510-5p ; hsa-mir-6859-5p ; hsa-mir-3916 ; hsa-mir-3125 ; hsa-mir-2278 ; hsa-mir-1277-5p ; hsa-mir-297 ; hsa-mir-448 ; hsa-mir-3924 ; hsa-mir-190a-3p ; hsa-mir-4789-5p ; hsa-mir-466 ; hsa-mir-567 ; hsa-mir-586 ; hsa-mir-5011-5p ; hsa-mir-4789-3p ; hsa-mir-4643 ; hsa-mir-574-5p ; hsa-mir-6867-5p ; hsa-mir-223-5p ; hsa-mir-511-3p ; hsa-mir-502-3p ; hsa-mir-501-3p ; hsa-mir-3148 ; hsa-mir-219a-2-3p ; hsa-mir-219b-3p ; hsa-mir-4680-3p ; hsa-mir-3140-5p ; hsa-mir-345-3p ; hsa-mir-3620-3p ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-367-3p ; hsa-mir-363-3p ; hsa-mir-92a-3p ; hsa-mir-92b-3p ; hsa-mir-32-5p ; hsa-mir-25-3p ; hsa-mir-3973 ; hsa-mir-628-5p ; hsa-mir-5585-5p ; hsa-mir-548ax ; hsa-mir-548ao-5p ; hsa-mir-2276-3p ; hsa-mir-4772-3p ; hsa-mir-3120-3p ; hsa-mir-632 ; hsa-mir-4288 ; hsa-mir-6888-3p ; hsa-mir-642a-5p ; hsa-mir-346 ; hsa-mir-7162-5p ; hsa-mir-516b-3p ; hsa-mir-516a-3p ; hsa-mir-2115-5p ; hsa-mir-3120-5p ; hsa-mir-4667-3p ; hsa-mir-1470

Nearest miRNA

hsa-mir-1286/Upstream/1850292; hsa-let-7a-3/Downstream/974738;

Nearest TSS

Nearest CpG islands

None/Target, chr22-CpG: 279/Upstream/152595, chr22-CpG: 108/Downstream/155335

Upstream sequence

cttttgtccttaatgtcaatatttacaacgtgccagaattatatcctttgcagttatttatacttataaaacttcatatatcaactcaaaaatgtgtgag

Downstream sequence

gaggtacatagtgtttcaaaatcattttaggggttatgcaaaacaaaaaAAAATACTGAAAAGCGGTAATataaggcacagtctttaccttctagaagtt