VISDB Viral Integration Site DataBase

VIS ID

TVIS30003433

Fusion event

HIV-RANGAP1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr22

Cytoband

q13.2

Reference genome

Start

End

41673707/41277703 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-16-5p ; hsa-mir-1301-3p ; hsa-mir-331-3p ; hsa-mir-92a-3p ; hsa-mir-31-5p ; hsa-mir-4730 ; hsa-mir-7847-3p ; hsa-mir-6851-5p ; hsa-mir-6880-5p ; hsa-mir-3689d ; hsa-mir-7854-3p ; hsa-mir-3934-5p ; hsa-mir-764 ; hsa-mir-125a-3p ; hsa-mir-5197-5p ; hsa-mir-6749-3p ; hsa-mir-4707-3p ; hsa-mir-18a-3p ; hsa-mir-324-3p ; hsa-mir-1913 ; hsa-mir-150-5p ; hsa-mir-186-3p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-129-5p ; hsa-mir-8055 ; hsa-mir-6864-3p ; hsa-mir-3672 ; hsa-mir-4753-3p ; hsa-mir-6873-3p ; hsa-mir-155-3p ; hsa-mir-223-3p ; hsa-mir-4697-3p ; hsa-mir-4524a-3p ; hsa-mir-130b-5p ; hsa-mir-6817-3p ; hsa-mir-7110-3p ; hsa-mir-1182 ; hsa-mir-4524b-3p ; hsa-mir-6796-3p ; hsa-mir-3159 ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-4438 ; hsa-mir-3149 ; hsa-mir-197-3p ; hsa-mir-4711-5p ; hsa-mir-7112-3p ; hsa-mir-4267 ; hsa-mir-153-5p ; hsa-mir-1250-3p ; hsa-mir-500b-3p ; hsa-mir-3124-3p ; hsa-mir-1238-3p ; hsa-mir-670-3p ; hsa-mir-452-3p ; hsa-mir-627-3p ; hsa-mir-483-3p ; hsa-mir-664a-3p ; hsa-mir-3142 ; hsa-mir-1245b-5p ; hsa-mir-32-3p ; hsa-mir-4753-5p ; hsa-mir-1207-5p ; hsa-mir-1286 ; hsa-mir-3158-3p ; hsa-mir-4323 ; hsa-mir-4436b-3p ; hsa-mir-4514 ; hsa-mir-4632-5p ; hsa-mir-4645-5p ; hsa-mir-4673 ; hsa-mir-4685-5p ; hsa-mir-4692 ; hsa-mir-4763-3p ; hsa-mir-6132 ; hsa-mir-6721-5p ; hsa-mir-6735-5p ; hsa-mir-6753-5p ; hsa-mir-6808-5p ; hsa-mir-6836-5p ; hsa-mir-6837-5p ; hsa-mir-6879-5p ; hsa-mir-6886-5p ; hsa-mir-6893-5p ; hsa-mir-7843-5p ; hsa-mir-7855-5p ; hsa-mir-873-5p ; hsa-mir-940

Nearest miRNA

hsa-mir-1281/Upstream/24653; hsa-let-7a-3/Downstream/623241;

Nearest TSS

Nearest CpG islands

None/Target, chr22-CpG: 279/Upstream/38865, chr22-CpG: 98/Downstream/7842

Upstream sequence

GACTTATAACCTAGCAGGGGCTCCCTAAGAAGTTGTCCAAGGTGGGTCCAAGTTTCCCTGGTTGGGCCAGAACCCAAGGATGGCTCACTGATGCGGGTAC

Downstream sequence

CTTCACTTCCAGATGCCAGGGGATTCAGGGTTGGTCAGTGCCAGCCAAGCCTTGGCAAGGGATGAAAAGACTTCCTGGGTGCTCTTAAAGTAAAAGTGAG