Basic Information
VIS ID
TVIS30003434
Fusion event
HIV-chr22 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr22
Cytoband
q13.2
Reference genome
GRCh37/hg19
Start
41813143/41417139 (Hg38)
End
41813143/41417139 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA22A
Nearest miRNA
hsa-mir-1281/Upstream/164089; hsa-let-7a-3/Downstream/483805;
Nearest TSS
ENST00000624155/Upstream/34204; ENST00000609612/Downstream/13795;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/2880, chr22-CpG: 177/Downstream/29114
Nearby gene
TOB2(No orient, 16349)
Upstream sequence
aaccccatctctactaaaaatacaaaaattagccaggtgtggtggtgtttgcctgtagtcccagctactcaggaggctgaagcaggagaatcacttgaag
Downstream sequence
ttgggaggcggaggttgcagtgagccgagatgacgccattgcactccaccctgggtgacagagctagacttcgtctcaaaataaataaataaaatgaagt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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