VISDB Viral Integration Site DataBase

VIS ID

TVIS30003435

Fusion event

HIV-XRCC6 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr22

Cytoband

q13.2

Reference genome

Start

End

42024365/41628361 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-941 ; hsa-mir-877-3p ; hsa-mir-766-3p ; hsa-mir-671-5p ; hsa-mir-615-3p ; hsa-mir-505-3p ; hsa-mir-193b-3p ; hsa-mir-484 ; hsa-mir-423-3p ; hsa-mir-324-3p ; hsa-mir-326 ; hsa-mir-128-3p ; hsa-mir-221-3p ; hsa-mir-181b-5p ; hsa-mir-100-5p ; hsa-mir-34b-5p ; hsa-mir-520g-3p ; hsa-mir-520h ; hsa-mir-506-5p ; hsa-mir-545-5p ; hsa-mir-545-3p ; hsa-mir-559 ; hsa-mir-548b-5p ; hsa-mir-548a-5p ; hsa-mir-548c-5p ; hsa-mir-548d-5p ; hsa-mir-1296-5p ; hsa-mir-449c-5p ; hsa-mir-548j-5p ; hsa-mir-548h-5p ; hsa-mir-548i ; hsa-mir-2682-5p ; hsa-mir-2909 ; hsa-mir-3120-3p ; hsa-mir-548w ; hsa-mir-548y ; hsa-mir-548o-5p ; hsa-mir-548ab ; hsa-mir-548ad-5p ; hsa-mir-548ae-5p ; hsa-mir-548ak ; hsa-mir-4514 ; hsa-mir-548am-5p ; hsa-mir-4692 ; hsa-mir-548ap-5p ; hsa-mir-5088-5p ; hsa-mir-548aq-5p ; hsa-mir-548ar-5p ; hsa-mir-548as-5p ; hsa-mir-548au-5p ; hsa-mir-548ay-5p ; hsa-mir-548bb-5p ; hsa-mir-30b-3p ; hsa-mir-149-3p ; hsa-mir-1233-5p ; hsa-mir-3689a-3p ; hsa-mir-3689b-3p ; hsa-mir-3689c ; hsa-mir-4721 ; hsa-mir-4728-5p ; hsa-mir-4796-3p ; hsa-mir-6778-5p ; hsa-mir-6779-5p ; hsa-mir-6780a-5p ; hsa-mir-6785-5p ; hsa-mir-6883-5p ; hsa-mir-1273h-5p ; hsa-mir-124-3p ; hsa-mir-6799-5p ; hsa-mir-7106-5p ; hsa-mir-6715b-5p ; hsa-mir-4269 ; hsa-mir-4742-5p ; hsa-mir-892c-5p ; hsa-mir-3158-3p ; hsa-mir-4446-3p ; hsa-mir-651-3p ; hsa-mir-548l ; hsa-mir-8054 ; hsa-mir-548k ; hsa-mir-548av-5p ; hsa-mir-196a-3p ; hsa-mir-6884-3p ; hsa-mir-7153-3p

Nearest miRNA

hsa-mir-1281/Upstream/375311; hsa-let-7a-3/Downstream/272583;

Nearest TSS

Nearest CpG islands

None/Target, chr22-CpG: 279/Upstream/6581, chr22-CpG: 27/Downstream/38425

Upstream sequence

AAAAACAGTATTggctgggcatggtggcggctcatgcctgtaatctcaggacattgggaggccgagacgggcagatcacttgagcctaggagtttgagac

Downstream sequence

caacctggtaacatggagaaaccccgtctctacaaaaaatacacaaatcatccaggtgtggtggtgcaaacctgtagtcctagctactcaggaggccgag