Basic Information
VIS ID
TVIS30003440
Fusion event
HIV-ARFGAP3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr22
Cytoband
q13.2
Reference genome
GRCh37/hg19
Start
43226537/42830531 (Hg38)
End
43226537/42830531 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA22A
Target gene
ARFGAP3
miRNAs that regulate target gene
hsa-mir-93-3p
Nearest miRNA
hsa-mir-1281/Upstream/907234; hsa-let-7a-3/Downstream/2370423;
Nearest TSS
ENST00000624155/Upstream/109233; ENST00000443063/Downstream/1121;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/60250, chr22-CpG: 125/Downstream/26116
Upstream sequence
CCGCGGTTGGTGACTGCTTCATCTTTCCTGTTACGCTATGTTCCTTAGAGTAGTTCAAGGCTCAGTTTATATAAGCCAGCACTTCTTAAGGTATCATAAC
Downstream sequence
CCATGAACTCACTGCTTAGTTGTCCAAAGTTACATTTTTGTTGTTAATTTACACTAACATTCTGGCCTAACAAAGGATGCACAACTTTAAAACAGAAAGA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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