Basic Information
VIS ID
TVIS30003447
Fusion event
HIV-chr22 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr22
Cytoband
q13.31
Reference genome
GRCh37/hg19
Start
47146185/46750288 (Hg38)
End
47146185/46750288 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA22A
Nearest miRNA
hsa-let-7a-3/Upstream/636520; hsa-mir-12114/Downstream/1524076;
Nearest TSS
ENST00000624155/Upstream/12027; ENST00000496139/Downstream/12275;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/11602, chr22-CpG: 73/Downstream/11882
Nearby gene
CERK(No orient, 12033)
Upstream sequence
GTCAGGGGCTTTCCCAGGCGTCCAGTGGCATCCAGCATGGTATGGGGCTAGGGTCATGGGGGCAGGGCGTCAGGAGGCTGGCACTCCTGCCGTGGGTGGA
Downstream sequence
TGGCATGAGGAAAGGAGGCTTCAGGCATCTTCCTGCATGGGAGAAACAACGCCTAGTCCCTTAACAAGTCCCTGAATCCTTCAGCTGCTAGCACTCCCCA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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