Basic Information
VIS ID
TVIS30003456
Fusion event
HIV-SYCE3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr22
Cytoband
q13.33
Reference genome
GRCh37/hg19
Start
50993288/50554859 (Hg38)
End
50993288/50554859 (Hg38)
Orient
-
Location type
Intronic
Target gene
SYCE3
Nearest miRNA
hsa-let-7a-3/Upstream/147335;
Nearest TSS
ENST00000624155/Upstream/6826; ENST00000380711/Downstream/1573;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/5147, chr22-CpG: 66/Downstream/7345
Upstream sequence
tgaggcgggcagatcacaaggtcaggagatcaagactatcctggccaacatggtgaaaccctgtctctattaaaaatacaaggccaggcgcggtggttta
Downstream sequence
cgcctgtaatcccagcactttgggaggccgagacgggcggatcacgaggtcaggagatcaagaccatcctggctaacacagtgaaaccccgtctctacta
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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