Basic Information
VIS ID
TVIS30003464
Fusion event
HIV-CAPN7 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p25.1
Reference genome
GRCh37/hg19
Start
15274664/15233157 (Hg38)
End
15274664/15233157 (Hg38)
Orient
+
Location type
Intronic
Target gene
CAPN7
miRNAs that regulate target gene
hsa-mir-877-3p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-6788-5p ; hsa-mir-1185-5p ; hsa-mir-382-3p ; hsa-mir-1468-3p ; hsa-mir-8063 ; hsa-mir-216b-5p ; hsa-mir-216a-5p ; hsa-mir-1260b ; hsa-mir-1260a ; hsa-mir-1224-3p ; hsa-mir-605-5p ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6514-3p ; hsa-mir-7977 ; hsa-mir-3165 ; hsa-mir-6880-5p ; hsa-mir-8071 ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-138-5p ; hsa-mir-6811-3p ; hsa-mir-214-5p ; hsa-mir-4456 ; hsa-mir-383-3p
Nearest miRNA
hsa-mir-12127/Upstream/4838595; hsa-let-7g/Downstream/263082;
Nearest TSS
ENST00000440867/Upstream/5207; ENST00000443567/Downstream/7352;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/26344, chr3-CpG: 100/Downstream/98650
Upstream sequence
ATGAGGTAAactagacttgagccagaaagaaattagtcagattggcatgactttaaattcttacaataaccagcctgtggccttagaaaatgtgtttaac
Downstream sequence
ctttcttagcctcttcatgtatccataatataaggataatatccacctcttgtcttaaagtcgtaaagatgaaaATTGCATCTTTATTCCAATAATAAAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate