Basic Information
VIS ID
TVIS30003468
Fusion event
HIV-ANKRD28 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p25.1
Reference genome
GRCh37/hg19
Start
15807731/15766224 (Hg38)
End
15807731/15766224 (Hg38)
Orient
+
Location type
Intronic
Target gene
ANKRD28
miRNAs that regulate target gene
hsa-mir-132-3p ; hsa-mir-21-5p ; hsa-mir-221-3p ; hsa-mir-130b-5p ; hsa-mir-3180-5p ; hsa-mir-513b-5p ; hsa-mir-5590-3p ; hsa-mir-142-5p ; hsa-mir-561-3p ; hsa-mir-548at-5p ; hsa-mir-5195-3p ; hsa-mir-145-5p ; hsa-mir-6885-3p ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-4753-3p ; hsa-mir-6873-3p ; hsa-mir-942-5p ; hsa-mir-6817-3p ; hsa-mir-7110-3p ; hsa-mir-3617-3p ; hsa-mir-3074-3p ; hsa-mir-3614-3p
Nearest miRNA
hsa-mir-12127/Upstream/68853; hsa-let-7g/Downstream/107547;
Nearest TSS
ENST00000440867/Upstream/9676; ENST00000470031/Downstream/30282;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/164150, chr3-CpG: 142/Downstream/92766
Upstream sequence
AACAAATATGAACAACAGGCCATGCAGTAAATAGTCAATTATGATTGAGAAACATTAAGAATAACAAAAATATACATAATGTGTTCTTATTACTCAGAGG
Downstream sequence
TTACCATACCAGATAAAATAAGAAGTTCAATGATTTCTGCATCTCCAAGGTAAGCTGCGGCGTGCAATGGGGTTCGCTTTTCATTGTCCTGTGATAATAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate