Basic Information
VIS ID
TVIS30003473
Fusion event
HIV-KAT2B integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p24.3
Reference genome
GRCh37/hg19
Start
20132728/20091236 (Hg38)
End
20132728/20091236 (Hg38)
Orient
-
Location type
Intronic
Target gene
KAT2B
miRNAs that regulate target gene
hsa-mir-181a-5p ; hsa-mir-181b-5p ; hsa-mir-25-3p ; hsa-mir-32-5p ; hsa-mir-92a-3p ; hsa-mir-93-5p ; hsa-mir-106b-5p ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-26b-5p ; hsa-mir-17-5p ; hsa-mir-92b-3p ; hsa-mir-142-3p ; hsa-mir-127-5p ; hsa-mir-539-5p
Nearest miRNA
hsa-mir-12127/Upstream/776305; hsa-let-7g/Downstream/46329;
Nearest TSS
ENST00000440867/Upstream/50538; ENST00000469085/Downstream/20358;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/50302, chr3-CpG: 62/Downstream/94561
Upstream sequence
tccatgatggaagattttttatttaattactgattcagtctccttacttgttattagtttgttcagattttctatattttcatgatttagttttggtagg
Downstream sequence
ttgtacattttcaggaatttacccatttcttttagattatccaatttattgacataactgttcatcataatctcttataatcctttgtatttctgtggta
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate