Basic Information
VIS ID
TVIS30003474
Fusion event
HIV-MIR548AC integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p24.3
Reference genome
GRCh37/hg19
Start
23459649/23418158 (Hg38)
End
23459649/23418158 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
MIR548AC
Nearest miRNA
hsa-mir-12127/Upstream/3280517; hsa-let-7g/Downstream/2246715;
Nearest TSS
ENST00000440867/Upstream/209458; ENST00000613545/Downstream/81448;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/214601, chr3-CpG: 66/Downstream/388043
Upstream sequence
gagtgaacggttctgtcttgctggcgttgcaggcaccactggggtatgaaaaaaaatcctgcagctagcttggtgtctgcacaaatggccgtccagtttt
Downstream sequence
gtacttgaaacccacggccctggtggcgtaggcacccgagggaatctcctggtctgcaggttgcagagaccgtgggaaaagcgtagtatcagggccagag
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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