Basic Information
VIS ID
TVIS30003479
Fusion event
HIV-SLC4A7 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p24.1
Reference genome
GRCh37/hg19
Start
27492413/27450922 (Hg38)
End
27492413/27450922 (Hg38)
Orient
-
Location type
Intronic
Target gene
SLC4A7
miRNAs that regulate target gene
hsa-mir-30a-5p ; hsa-mir-34a-5p ; hsa-mir-19b-3p ; hsa-mir-25-3p ; hsa-mir-20a-5p ; hsa-mir-106b-5p ; hsa-mir-30e-5p ; hsa-mir-30d-5p ; hsa-mir-30c-5p ; hsa-mir-30b-5p ; hsa-mir-519d-3p ; hsa-mir-93-5p ; hsa-mir-20b-5p ; hsa-mir-17-5p
Nearest miRNA
hsa-mir-12127/Upstream/1785983; hsa-let-7g/Downstream/3710782;
Nearest TSS
ENST00000440867/Upstream/26420; ENST00000607601/Downstream/5832;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/81347, chr3-CpG: 132/Downstream/32521
Upstream sequence
GCCTATTTACTCAAACTCTCTTAAACTTAATCTCTCCCTCAAACTTGATACCAAACTTGAAGATGTGTACAAAGTATGCAGAGCTTAGGGCCTGTGATAA
Downstream sequence
CCAAAGGAATCGAAGGAATATCCAGGTTATGTATAGGTGAGGGTTGACATTAAACATTAAATGTATGACTGTACATTTGAATTAGTAAAATTACCGCTAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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