Basic Information
VIS ID
TVIS30003483
Fusion event
HIV-STT3B integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p23
Reference genome
GRCh37/hg19
Start
31635248/31593756 (Hg38)
End
31635248/31593756 (Hg38)
Orient
+
Location type
Intronic
Target gene
STT3B
miRNAs that regulate target gene
hsa-mir-15b-5p ; hsa-mir-23a-3p ; hsa-mir-16-5p
Nearest miRNA
hsa-mir-12127/Upstream/431969; hsa-let-7g/Downstream/912527;
Nearest TSS
ENST00000440867/Upstream/60131; ENST00000436236/Downstream/3050;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/59966, chr3-CpG: 104/Downstream/386721
Upstream sequence
cctacttagtgaattttttattccatttattatgcttttcagctctaaaatttctagttcattcttatttctcacatgtataggagaatatgtatctctg
Downstream sequence
tttctttatggaaattttgtgttatatcattatatttttctttaattttcttaatatagtattctttaattccttgaacatataacagctgttttagagt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate