VISDB Viral Integration Site DataBase

VIS ID

TVIS30003485

Fusion event

HIV-CMTM6 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr3

Cytoband

p22.3

Reference genome

Start

End

32538525/32497033 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-378a-3p ; hsa-mir-128-3p ; hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-26b-5p ; hsa-mir-92a-3p ; hsa-mir-2681-5p ; hsa-mir-489-3p ; hsa-mir-3913-3p ; hsa-mir-378a-5p ; hsa-mir-6831-3p ; hsa-mir-215-3p ; hsa-mir-6773-3p ; hsa-mir-629-3p ; hsa-mir-4279 ; hsa-mir-6749-3p ; hsa-mir-1260b ; hsa-mir-1260a ; hsa-mir-532-3p ; hsa-mir-136-5p ; hsa-mir-660-3p ; hsa-mir-5193 ; hsa-mir-1224-3p ; hsa-mir-8063 ; hsa-mir-4477b ; hsa-mir-101-3p ; hsa-mir-4490 ; hsa-mir-3148 ; hsa-mir-545-5p ; hsa-mir-144-3p ; hsa-mir-1277-5p ; hsa-mir-651-3p ; hsa-mir-548z ; hsa-mir-548h-3p ; hsa-mir-548d-3p ; hsa-mir-548bb-3p ; hsa-mir-548ac ; hsa-mir-134-5p ; hsa-mir-16-2-3p ; hsa-mir-195-3p ; hsa-mir-3118 ; hsa-mir-3136-5p ; hsa-mir-3161 ; hsa-mir-338-5p ; hsa-mir-4439 ; hsa-mir-4513 ; hsa-mir-599 ; hsa-mir-642a-3p ; hsa-mir-642b-3p ; hsa-mir-6730-3p ; hsa-mir-6855-3p ; hsa-mir-6857-3p ; hsa-mir-888-3p

Nearest miRNA

hsa-mir-12127/Upstream/1335246; hsa-let-7g/Downstream/9250;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/29000, chr3-CpG: 31/Downstream/5563

Upstream sequence

GAAGGCAGGAGGGAACACCTGTCTGGTTTAGTAGGTTAGAAAACAGGAGGAACAGAGGATTGGGTGGGGCCTAAAGGAATTCTACAGTTCCGAGTGTAGG

Downstream sequence

AGGGAAAAGAGCAACTAACTTCTTATCAGCAAGCCACAGGAAGTGTTTTTAAAAAAAGAAAACTCCTACAccgggcgcggtggctcacgcctgtaatccc