Basic Information
VIS ID
TVIS30003486
Fusion event
HIV-CLASP2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p22.3
Reference genome
GRCh37/hg19
Start
33546910/33505418 (Hg38)
End
33546910/33505418 (Hg38)
Orient
+
Location type
Intronic
Target gene
CLASP2
miRNAs that regulate target gene
hsa-mir-210-3p
Nearest miRNA
hsa-mir-12127/Upstream/999029; hsa-let-7g/Downstream/2239058;
Nearest TSS
ENST00000440867/Upstream/64047; ENST00000430877/Downstream/33;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/64046, chr3-CpG: 86/Downstream/212296
Upstream sequence
gcaagctacaccacaaatatgggccaccatcATCAAGGCTACTGAGCATGGGGGATGGTAGGCAGTTAGGTAAGTTTCTTACTGAAAATAAAAAAGTATT
Downstream sequence
TTCAGTacatgaaaaagaatgaagttgaaaccctacctcacaccatatacaaaaattaactcaaGGAGTGATGCACAGAAAATGGCAGACAGAGTAGGAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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