Basic Information
VIS ID
TVIS30003489
Fusion event
HIV-LOC101928323 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p22.1
Reference genome
GRCh37/hg19
Start
42661971/42620479 (Hg38)
End
42661971/42620479 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
LOC101928323
Nearest miRNA
hsa-mir-12127/Upstream/3482213; hsa-let-7g/Downstream/1493733;
Nearest TSS
ENST00000440867/Upstream/660; ENST00000466553/Downstream/526;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/19366, chr3-CpG: 113/Downstream/33557
Upstream sequence
GCATCTGCATAAATCTAACTATTGCACTTGCCCCAAAAAGCCTTAGAAAAGTCAGTTGCAGAGATTTGTAATGAAATCTAATATTACTAGGTTTTAACGC
Downstream sequence
TATAATAGCTTCAGTGTTATAATAGTCTTTTATATTTCCTTTGGGGGAAAATGGATTACTACTCTTTTTCAGAAGCCTGTTCCCAAGGTAATCACTTTTT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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