Basic Information
VIS ID
TVIS30003496
Fusion event
HIV-SACM1L integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p21.31
Reference genome
GRCh37/hg19
Start
45746676/45705184 (Hg38)
End
45746676/45705184 (Hg38)
Orient
-
Location type
Exonic
Target gene
SACM1L
miRNAs that regulate target gene
hsa-mir-155-5p ; hsa-mir-101-3p ; hsa-mir-26b-5p ; hsa-mir-21-5p ; hsa-mir-16-5p ; hsa-mir-324-3p ; hsa-mir-92a-3p ; hsa-mir-3692-3p ; hsa-mir-6862-5p ; hsa-mir-4253 ; hsa-mir-3945 ; hsa-mir-141-5p
Nearest miRNA
hsa-mir-12127/Upstream/843203; hsa-let-7g/Downstream/2144371;
Nearest TSS
ENST00000440867/Upstream/15725; ENST00000463659/Downstream/8012;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/15382, chr3-CpG: 80/Downstream/90804
Upstream sequence
GTTGGTGAGCTTTTTGTATGTGATTTTTCTTTCTTTCCTTTCTTTTAAAGTCAAGAAAGATGTTCCTCCTTCAGCTGTCACAAGACCAATATTTGGTATA
Downstream sequence
CTGGGCACAATCCATCTGGTGGCAGGTAAGAGAAAATAAGCTAAGATGGGCAAAGAAGGTAATTAGCAAGGTAGTTAAATTGTTAATATTAGAGTGAGTA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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