Basic Information
VIS ID
TVIS30003498
Fusion event
HIV-XCR1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p21.31
Reference genome
GRCh37/hg19
Start
46079991/46038499 (Hg38)
End
46079991/46038499 (Hg38)
Orient
+
Location type
Intronic
Target gene
XCR1
Nearest miRNA
hsa-mir-12127/Upstream/1176518; hsa-let-7g/Downstream/1811056;
Nearest TSS
ENST00000440867/Upstream/10757; ENST00000484025/Downstream/125105;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/42518, chr3-CpG: 26/Downstream/426172
Nearby gene
XCR1(No orient, 11012)
Upstream sequence
tgtttatttttgcttctaattttcaattattgttgtttattctcttttgggttttacttatgtatacatctctataaaactattgatgtttttagtttgc
Downstream sequence
aattgaaggcttttatttggttctttgaatagacattttgtttcctatgcatttctaacgagtcatcatttgttctgtttatccagaattcctaggctac
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate