Basic Information
VIS ID
TVIS30003499
Fusion event
HIV-chr3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p21.31
Reference genome
GRCh37/hg19
Start
46168566/46127074 (Hg38)
End
46168566/46127074 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-12127/Upstream/1265093; hsa-let-7g/Downstream/1722481;
Nearest TSS
ENST00000440867/Upstream/99332; ENST00000484025/Downstream/36530;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/131093, chr3-CpG: 26/Downstream/337597
Nearby gene
CCR1(No orient, 74634)
Upstream sequence
ggtaaaagacttgtatattgcagatcacaaatattgctgaaagaaattaaagaagtcacaaataaattgaaagacatcctgtgtttacagattggaagac
Downstream sequence
ttaatattgttaactattagtattacaaaacaatctacagagtcaatgcaatttctatcaaaatcccaatgactattttgtggaaatagaaaagttcatc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate