Home
Browse
Prime browse
Clustered VIS browse
Search
Curation
Gene
Target gene
All
Oncogene
Tumor suppressor gene
Nearby gene
All
Oncogene
Tumor suppressor gene
MicroRNA
RNA-interaction
ncRNA
Host2Host
Host2Virus
Virus2Host
• miRNA
Host2Host
Host2Virus
Virus2Host
• lncRNA
Host2Host
Host2Virus
Virus2Host
Download
Statistics
Help
VISDB
Viral Integration Site DataBase
Homepage
Prime VIS Browse Options
TVIS30003508
Basic Information
VIS ID
TVIS30003508
Fusion event
HIV-MAP4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p21.31
Reference genome
GRCh37/hg19
Start
47989223/47947733 (Hg38)
End
47989223/47947733 (Hg38)
Orient
+
Location type
Intronic
Target gene
MAP4
miRNAs that regulate target gene
hsa-mir-34a-5p
;
hsa-mir-103a-3p
;
hsa-mir-16-5p
;
hsa-mir-551b-3p
;
hsa-mir-484
;
hsa-mir-339-5p
;
hsa-mir-331-3p
;
hsa-mir-328-3p
;
hsa-mir-23b-3p
;
hsa-mir-196a-5p
;
hsa-mir-100-5p
;
hsa-mir-92a-3p
;
hsa-let-7b-5p
;
hsa-mir-1207-5p
;
hsa-mir-1827
;
hsa-mir-1913
;
hsa-mir-2682-5p
;
hsa-mir-3151-5p
;
hsa-mir-324-3p
;
hsa-mir-34b-5p
;
hsa-mir-34c-5p
;
hsa-mir-4421
;
hsa-mir-4446-3p
;
hsa-mir-4447
;
hsa-mir-4472
;
hsa-mir-449a
;
hsa-mir-449b-5p
;
hsa-mir-449c-5p
;
hsa-mir-4720-3p
;
hsa-mir-4763-3p
;
hsa-mir-486-3p
;
hsa-mir-491-5p
;
hsa-mir-5587-3p
;
hsa-mir-5693
;
hsa-mir-5699-3p
;
hsa-mir-6132
;
hsa-mir-6721-5p
;
hsa-mir-6742-5p
;
hsa-mir-6748-3p
;
hsa-mir-6762-3p
;
hsa-mir-6773-3p
;
hsa-mir-6796-3p
;
hsa-mir-6796-5p
;
hsa-mir-6829-5p
;
hsa-mir-6836-5p
;
hsa-mir-6860
;
hsa-mir-6879-3p
;
hsa-mir-6882-3p
;
hsa-mir-99a-3p
;
hsa-mir-99b-3p
Nearest miRNA
hsa-mir-12127/Upstream/98104; hsa-let-7g/Downstream/248831;
Nearest TSS
ENST00000440867/Upstream/19431;
ENST00000296435/Downstream/68679;
Nearest CpG islands
None/Target,
chr3-CpG: 148/Upstream/97679
,
chr3-CpG: 98/Downstream/140702
Upstream sequence
actgcatttctactaaaatacaaaaaagttagccaggcgtggtggtgggcgcctgtagtcccagttactcgggaggctgaggcaagagaattgcttgaac
Downstream sequence
ccgggaggcagaggttgcagtgagccaagatcgcaccactgcactccagcctgggcgacagagagagtctcaaaaaaaaaaaaaaagaaaagaaaaaaga
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Sample Information
×
Sample name
Active CD4+
Sample type
Cell line
Gender
Female
CpG Island Information
×
Download
Curate