Basic Information
VIS ID
TVIS30003519
Fusion event
HIV-DAG1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p21.31
Reference genome
GRCh37/hg19
Start
49551518/49514085 (Hg38)
End
49551518/49514085 (Hg38)
Orient
+
Location type
Intronic
Target gene
DAG1
miRNAs that regulate target gene
hsa-mir-29a-3p ; hsa-mir-155-5p ; hsa-mir-30a-5p ; hsa-mir-1229-3p ; hsa-mir-423-5p ; hsa-mir-18a-3p ; hsa-mir-222-3p ; hsa-mir-3676-3p ; hsa-mir-142-3p
Nearest miRNA
hsa-mir-12127/Upstream/239899; hsa-let-7g/Downstream/292052;
Nearest TSS
ENST00000440867/Upstream/3861; ENST00000467456/Downstream/40255;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/43228, chr3-CpG: 39/Downstream/25729
Upstream sequence
TGTTGTATTTGGCAGAGAGATGTTTAACAGGCTTATTTACCAAGGGGGTGAAGAGATTTTACTGAGAAAACAGGATTTTATCTGAGCATATTTATCTGTG
Downstream sequence
GAAAGCAGACCATTTAGTAGCTGATGAGCTTGTAGAAAAACAGATGAAGATGTGTGACTCTTCGTTCCAGTCTTAACCACCGGGATTATATGGGTTGGGG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate