Home
Browse
Prime browse
Clustered VIS browse
Search
Curation
Gene
Target gene
All
Oncogene
Tumor suppressor gene
Nearby gene
All
Oncogene
Tumor suppressor gene
MicroRNA
RNA-interaction
ncRNA
Host2Host
Host2Virus
Virus2Host
• miRNA
Host2Host
Host2Virus
Virus2Host
• lncRNA
Host2Host
Host2Virus
Virus2Host
Download
Statistics
Help
VISDB
Viral Integration Site DataBase
Homepage
Prime VIS Browse Options
TVIS30003528
Basic Information
VIS ID
TVIS30003528
Fusion event
HIV-WDR82 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p21.2
Reference genome
GRCh37/hg19
Start
52301937/52267921 (Hg38)
End
52301937/52267921 (Hg38)
Orient
-
Location type
Intronic
Target gene
WDR82
miRNAs that regulate target gene
hsa-mir-30a-5p
;
hsa-mir-30a-3p
;
hsa-mir-92b-3p
;
hsa-mir-17-5p
;
hsa-mir-155-5p
;
hsa-mir-193b-3p
;
hsa-mir-193a-3p
;
hsa-mir-1207-5p
;
hsa-mir-30b-5p
;
hsa-mir-30c-5p
;
hsa-mir-30d-5p
;
hsa-mir-30e-5p
;
hsa-mir-3910
;
hsa-mir-4302
;
hsa-mir-4711-5p
;
hsa-mir-4747-5p
;
hsa-mir-4763-3p
;
hsa-mir-5094
;
hsa-mir-5196-5p
;
hsa-mir-541-3p
;
hsa-mir-605-3p
;
hsa-mir-654-5p
;
hsa-mir-6721-5p
;
hsa-mir-6733-3p
;
hsa-mir-6879-5p
;
hsa-mir-9500
;
hsa-mir-129-5p
;
hsa-mir-19a-5p
;
hsa-mir-19b-1-5p
;
hsa-mir-19b-2-5p
;
hsa-mir-3672
;
hsa-mir-4423-5p
;
hsa-mir-6501-5p
;
hsa-mir-6864-3p
;
hsa-mir-6885-3p
;
hsa-mir-744-3p
;
hsa-mir-8055
Nearest miRNA
hsa-mir-12127/Upstream/1592758; hsa-let-7g/Downstream/357;
Nearest TSS
ENST00000440867/Upstream/18960;
ENST00000473583/Downstream/217;
Nearest CpG islands
None/Target,
chr3-CpG: 148/Upstream/21797
,
chr3-CpG: 97/Downstream/10132
Upstream sequence
TGCAAAATAGAAAAGTATTATCCCCTTAAAAAGACTAGGAATAAGGAAAAATTGTTGAGAAACAGCTAAGGGAAAATGGTACCAAAATGCAGAAAGAAAA
Downstream sequence
CCATAGAAAGAACATTCTGAAGGCAAACAGAACATAGGAATAAAGGGGTTGAAAGCATCGAGTCATCCCAGGGGTTCACAGGGGTGCTTTCTAATAAGAG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Sample Information
×
Sample name
Active CD4+
Sample type
Cell line
Gender
Female
CpG Island Information
×
Download
Curate