Basic Information
VIS ID
TVIS30003539
Fusion event
HIV-SLMAP integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p14.3
Reference genome
GRCh37/hg19
Start
57766288/57780561 (Hg38)
End
57766288/57780561 (Hg38)
Orient
+
Location type
Intronic
Target gene
SLMAP
miRNAs that regulate target gene
hsa-mir-130b-3p ; hsa-mir-21-5p ; hsa-mir-19b-3p
Nearest miRNA
hsa-let-7g/Upstream/1927967; hsa-mir-12124/Downstream/2837244;
Nearest TSS
ENST00000440867/Upstream/23003; ENST00000475055/Downstream/81439;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/23298, chr3-CpG: 90/Downstream/227550
Upstream sequence
CTATAACATATTTCCTAGATAATACTAATAAAGCATGAAATATTAAAAACTTGGATAGGtgaggtgttattaatcttatatatcttgatctgggtggtag
Downstream sequence
ttacaagggtgtgttcatctggtggtgattcatcaagctatacacttttgatttgttcaattctttgtaggtatttcaacttaaataatttttttttttt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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