Basic Information
VIS ID
TVIS30003541
Fusion event
HIV-SUCLG2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p14.1
Reference genome
GRCh37/hg19
Start
67651896/67601472 (Hg38)
End
67651896/67601472 (Hg38)
Orient
+
Location type
Intronic
Target gene
SUCLG2
miRNAs that regulate target gene
hsa-mir-124-3p ; hsa-mir-92a-3p ; hsa-mir-4659b-3p ; hsa-mir-4659a-3p ; hsa-mir-6875-3p ; hsa-mir-3679-3p ; hsa-mir-2355-5p ; hsa-mir-5581-5p ; hsa-mir-4297 ; hsa-mir-627-3p ; hsa-mir-6734-3p ; hsa-mir-6832-3p ; hsa-mir-6756-3p ; hsa-mir-6887-3p ; hsa-mir-3127-3p ; hsa-mir-6793-3p
Nearest miRNA
hsa-let-7g/Upstream/375945; hsa-mir-12124/Downstream/1447486;
Nearest TSS
ENST00000440867/Upstream/73250; ENST00000464420/Downstream/53135;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/602623, chr3-CpG: 45/Downstream/52732
Upstream sequence
atgagcatgttcctttgataatcagaaaaGATTTGTCTAATTATGTTTAAGATTTCTTTAAAAGGGGCAATCCACCCAGACAGAGCGATCACAGCAGTGA
Downstream sequence
GGTCCTATGTCATTTACCCTAGGTAAAGTTTTTCTGTTTTTCTGCATTTATAGCCCATAAAGTACCCTCTGAACTTTCAAAACTGCCAAACTTTACAATG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate