Basic Information
VIS ID
TVIS30003543
Fusion event
HIV-FOXP1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p13
Reference genome
End
71452909/71403758 (Hg38)
Orient
+
Location type
Intronic
Target gene
Nearest miRNA
hsa-let-7g/Upstream/2354723; hsa-mir-12124/Downstream/138212;
Nearest cancer related gene
FOXP1(OG, No orient, 0)
Upstream sequence
ggcaacatggcgaaaccccatctccattaaaaatacaaaaaaaatagcccaatgtggtggcaggcacctgtagtcccagctacttgggaggctgaggtgg
Downstream sequence
caagattgtttgggcccaagaggtggaggttgtagtgagccaagatcgcaccactgcactccagcctgtgcaacagagcaagacactgcctcaaaaacag
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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