Basic Information
VIS ID
TVIS30003547
Fusion event
HIV-EBLN2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p13
Reference genome
GRCh37/hg19
Start
73111012/73061861 (Hg38)
End
73111012/73061861 (Hg38)
Orient
-
Location type
UTR5
Target gene
EBLN2
Nearest miRNA
hsa-let-7g/Upstream/1519772; hsa-mir-12124/Downstream/2152615;
Nearest TSS
ENST00000440867/Upstream/202; ENST00000460360/Downstream/2153;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/64495, chr3-CpG: 21/Downstream/48845
Upstream sequence
gatgagtgatcatagctcactgcagccttaaactctagtgatcctcccgccttggccttccaaagtgctgagattacagatgtgaaccaccacacccagc
Downstream sequence
CCAGTCAATTTGTTTTTAGAATGTTCCCAAGAATATAGTTATGTTGCTAAATAAGATACTAAAATAATCCCATACTATATTTCTTGACAGAAAAACTATT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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