Basic Information
VIS ID
TVIS30003554
Fusion event
HIV-MIR548G integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q12.1
Reference genome
GRCh37/hg19
Start
99650645/99931801 (Hg38)
End
99650645/99931801 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
MIR548G
Nearest miRNA
hsa-let-7g/Upstream/3571762; hsa-mir-12124/Downstream/32513;
Nearest TSS
ENST00000440867/Upstream/55598; ENST00000479555/Downstream/182463;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/55344, chr3-CpG: 22/Downstream/293459
Upstream sequence
ccctcatcttcaaagcggagatactactacctaacgtagttggccattctggaaacaatataaaataaATTAATGTTTAAAGGACACATTAGCTCCACAT
Downstream sequence
CTGATTATATAATCATCCAAATGAATTTATAATAGGAAGAAAAATTCTTCCACTGTTGAGGTTTATAACTAGGAGAGAAAATATCAGTTGAACTTATAAT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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