Basic Information
VIS ID
TVIS30003559
Fusion event
HIV-LOC107986108 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q13.11
Reference genome
GRCh37/hg19
Start
104388100/104669256 (Hg38)
End
104388100/104669256 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC107986108
Nearest miRNA
hsa-let-7g/Upstream/1145140; hsa-mir-12124/Downstream/4933572;
Nearest TSS
ENST00000440867/Upstream/1995343; ENST00000470756/Downstream/697653;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/2819054, chr3-CpG: 32/Downstream/684429
Nearby gene
MIR548A3(No orient, 441995)
Upstream sequence
TAACTCTCACATCGGGTGTAATTTACCAAATTGGTTTGAAGGCATTTCAGAAAAGTACAGAAGCCATGGTCTGCATTACTGATGGATTTATCCAAGTACT
Downstream sequence
TGATAGTCCATTAGGAGAATGATTCATCTGAAAGCAAGGGCAGACCAATATCCACACAGCGCTTCAAACACACAACCAATTTGAGAAGCAACCAGACAGC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate