Basic Information
VIS ID
TVIS30003560
Fusion event
HIV-LOC105374027 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q13.11
Reference genome
GRCh37/hg19
Start
105908613/106189766 (Hg38)
End
105908613/106189766 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105374027
Nearest miRNA
hsa-let-7g/Upstream/2665650; hsa-mir-12124/Downstream/3413062;
Nearest TSS
ENST00000440867/Upstream/320214; ENST00000473550/Downstream/940225;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/320392, chr3-CpG: 49/Downstream/1050796
Nearby gene
CBLB(No orient, 320726)
Upstream sequence
AAATTCTAAGTATCAACATTATAAAAGATGAAATTTTATTCTCTCCTTTCAACCAGCTATTTTCTGCACTTTAAAAAATAGGTATATTTACATTGCTAAC
Downstream sequence
TACCAAGCAAACTCCTTTCCAATTCAGCATTTCTCGTTTCTTACTATTTCTTTGTTGGGTGTCTGTTCTTATTTCAATAAAACAATTAAACAAAGTTCCA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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