Basic Information
VIS ID
TVIS30003563
Fusion event
HIV-LOC105374041 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q13.2
Reference genome
GRCh37/hg19
Start
112120677/112401830 (Hg38)
End
112120677/112401830 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105374041
Nearest miRNA
hsa-let-7g/Upstream/288932; hsa-mir-12124/Downstream/335259;
Nearest TSS
ENST00000440867/Upstream/68652; ENST00000468642/Downstream/7304;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/68271, chr3-CpG: 77/Downstream/159345
Nearby gene
CD200(No orient, 39019)
Upstream sequence
gagaaagaattttcacaaggtaatgtcatgagttaaggcaggaaccgggcattttcacttattttgtgattcttcacttgcttcaggccatctggatgaa
Downstream sequence
tatgtgcaggcttgggttaggaggcctgacacatcaaatacctatgagttgggtgatcctctcctcttgaggttccaagataaacctggggctcctgggc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate