Basic Information
VIS ID
TVIS30003564
Fusion event
HIV-IGSF11 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q13.32
Reference genome
GRCh37/hg19
Start
118786922/119068075 (Hg38)
End
118786922/119068075 (Hg38)
Orient
-
Location type
Intronic
Target gene
IGSF11
miRNAs that regulate target gene
hsa-mir-4668-5p ; hsa-mir-3613-3p ; hsa-mir-340-5p ; hsa-mir-3163
Nearest miRNA
hsa-let-7g/Upstream/2217708; hsa-mir-12124/Downstream/1016489;
Nearest TSS
ENST00000440867/Upstream/33120; ENST00000492792/Downstream/37146;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/32961, chr3-CpG: 75/Downstream/172417
Upstream sequence
agtagatgtcAATAtccctagtagattctaatgagtagccaatcttaagcaatactgACTGCATCTAAGAAACTATTACAAGGTTGAGGTCTAAGTTGAA
Downstream sequence
GTACTTAGGTTCTCTCAGCTTTCCCTCACTGCTACAAGATAAATGGGTCTTCACCTATCATGCCTATCATGTTCCATGCTGGAGAAAGGAGACCGTCCAT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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