Basic Information
VIS ID
TVIS30003566
Fusion event
HIV-STXBP5L integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q13.33
Reference genome
GRCh37/hg19
Start
120711421/120992574 (Hg38)
End
120711421/120992574 (Hg38)
Orient
-
Location type
Intronic
Target gene
STXBP5L
miRNAs that regulate target gene
hsa-mir-6083 ; hsa-mir-3692-3p ; hsa-mir-4436b-5p ; hsa-mir-6509-3p ; hsa-mir-5579-3p ; hsa-mir-208b-5p ; hsa-mir-208a-5p ; hsa-mir-374c-3p ; hsa-mir-576-5p ; hsa-mir-4263 ; hsa-mir-1263 ; hsa-mir-150-3p ; hsa-mir-6749-3p ; hsa-mir-6792-3p ; hsa-mir-4691-5p ; hsa-mir-660-3p ; hsa-mir-5193
Nearest miRNA
hsa-let-7g/Upstream/596845; hsa-mir-12124/Downstream/57066;
Nearest TSS
ENST00000440867/Upstream/83003; ENST00000334384/Downstream/489022;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/83855, chr3-CpG: 41/Downstream/553048
Upstream sequence
ttaaactaccattctacactctaccttcatgagatcaattttttttatctactacatatgagtgagaatatgtgatgtttatatttctgtgactggctga
Downstream sequence
ttttacttaacatgatggacgtgcagttctatccatgctgctgcaaatgacaggattttattctttttttaaataactgaatagatttcattttgtatat
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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