VISDB Viral Integration Site DataBase

VIS ID

TVIS30003570

Fusion event

HIV-RAB7A integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr3

Cytoband

q21.3

Reference genome

Start

End

128450307/128731464 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-324-3p ; hsa-mir-299-3p ; hsa-mir-6748-5p ; hsa-mir-6759-5p ; hsa-mir-6847-3p ; hsa-mir-6881-5p ; hsa-mir-6835-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-6739-5p ; hsa-mir-6733-5p ; hsa-mir-6797-5p ; hsa-mir-3153 ; hsa-mir-1249-5p ; hsa-mir-6133 ; hsa-mir-6130 ; hsa-mir-6129 ; hsa-mir-6127 ; hsa-mir-4510 ; hsa-mir-4419a ; hsa-mir-5681a ; hsa-mir-6783-5p ; hsa-mir-4756-5p ; hsa-mir-4739 ; hsa-mir-1321 ; hsa-mir-4779 ; hsa-mir-6891-5p ; hsa-mir-3173-3p ; hsa-mir-561-5p ; hsa-mir-6830-5p ; hsa-mir-2355-3p ; hsa-mir-676-3p ; hsa-mir-5590-5p ; hsa-mir-3124-5p ; hsa-mir-6793-5p ; hsa-mir-4437 ; hsa-mir-5580-5p ; hsa-mir-6882-3p ; hsa-mir-6817-5p ; hsa-mir-4769-3p ; hsa-mir-6893-3p ; hsa-mir-370-3p ; hsa-mir-3607-5p ; hsa-mir-3614-3p

Nearest miRNA

hsa-let-7g/Upstream/1144288; hsa-mir-12124/Downstream/115344;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/4657, chr3-CpG: 55/Downstream/147869

Nearest cancer related gene

RAB7A(TSG, No orient, 0)

Upstream sequence

TCCCTGAGATAACTGCGGGTCATTTAAAACCCACTCTTAAATCCTCTGACCTGCACCATGTTAATGGTTGTTAAAAAAGCGATAACATTTTGTAGAAACC

Downstream sequence

TTCCTACACATTTGCCTTTAAATGCTTTTTAATGTTTCTGTGGTATTTGTAGTTTACATGTGATTTCATTTGGTGCTCACAACTGTTGTGTGTATCTGCC