VISDB Viral Integration Site DataBase

VIS ID

TVIS30003571

Fusion event

HIV-CNBP integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr3

Cytoband

q21.3

Reference genome

Start

End

128895172/129176329 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-877-3p ; hsa-mir-186-5p ; hsa-mir-26a-5p ; hsa-let-7e-5p ; hsa-let-7a-5p ; hsa-mir-548s ; hsa-mir-302b-5p ; hsa-mir-302d-5p ; hsa-mir-6510-3p ; hsa-mir-369-3p ; hsa-mir-889-3p ; hsa-mir-6887-3p ; hsa-mir-939-3p ; hsa-mir-323a-3p ; hsa-mir-3658 ; hsa-mir-3653-3p ; hsa-mir-143-5p ; hsa-mir-764 ; hsa-mir-100-3p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-92b-5p ; hsa-mir-4533 ; hsa-mir-184 ; hsa-mir-3148 ; hsa-mir-6133 ; hsa-mir-6130 ; hsa-mir-6129 ; hsa-mir-6127 ; hsa-mir-4510 ; hsa-mir-4419a ; hsa-mir-6875-5p ; hsa-mir-3126-5p ; hsa-mir-1252-5p ; hsa-mir-6125 ; hsa-mir-4739 ; hsa-mir-4756-5p ; hsa-mir-1321 ; hsa-mir-651-3p ; hsa-mir-25-5p ; hsa-mir-564 ; hsa-mir-6087 ; hsa-mir-665 ; hsa-mir-183-5p ; hsa-mir-4695-5p ; hsa-mir-5197-5p ; hsa-mir-3187-3p ; hsa-mir-4435 ; hsa-mir-4701-5p ; hsa-mir-588 ; hsa-mir-4709-3p ; hsa-mir-5189-3p ; hsa-mir-4756-3p ; hsa-mir-3919 ; hsa-mir-892c-5p ; hsa-mir-6782-3p ; hsa-mir-5692a ; hsa-mir-655-3p ; hsa-mir-374c-5p ; hsa-mir-6797-5p ; hsa-mir-1249-5p ; hsa-mir-3618 ; hsa-mir-3680-3p ; hsa-mir-557 ; hsa-mir-507 ; hsa-mir-450b-5p ; hsa-mir-4325 ; hsa-mir-7703 ; hsa-mir-6826-3p ; hsa-mir-5681b ; hsa-mir-6795-3p ; hsa-mir-5579-5p ; hsa-mir-5583-3p ; hsa-mir-4517 ; hsa-mir-4282 ; hsa-mir-6888-3p ; hsa-mir-31-5p ; hsa-mir-196a-3p ; hsa-mir-4696 ; hsa-mir-4522 ; hsa-mir-3120-5p ; hsa-mir-6860 ; hsa-mir-612 ; hsa-mir-5189-5p ; hsa-mir-3187-5p ; hsa-mir-1285-3p ; hsa-mir-3664-5p ; hsa-mir-4432 ; hsa-mir-7851-3p ; hsa-mir-490-3p ; hsa-mir-3145-5p ; hsa-mir-6861-3p ; hsa-mir-1286 ; hsa-mir-6790-3p ; hsa-mir-2276-3p ; hsa-mir-4638-5p ; hsa-mir-1304-3p ; hsa-mir-6741-3p ; hsa-mir-6890-3p ; hsa-mir-4260 ; hsa-mir-5572 ; hsa-mir-6803-5p ; hsa-mir-450a-2-3p ; hsa-mir-6751-5p ; hsa-mir-7109-5p ; hsa-mir-4665-5p ; hsa-mir-1275 ; hsa-mir-6885-5p ; hsa-mir-328-5p ; hsa-mir-6887-5p ; hsa-mir-6795-5p ; hsa-mir-6848-5p ; hsa-mir-6846-5p ; hsa-mir-4656 ; hsa-mir-185-3p ; hsa-mir-7854-3p ; hsa-mir-6134 ; hsa-mir-6516-5p ; hsa-mir-455-3p ; hsa-mir-7847-3p ; hsa-mir-6851-5p ; hsa-mir-6880-5p ; hsa-mir-3689d ; hsa-mir-6086 ; hsa-mir-377-5p ; hsa-mir-1273g-3p ; hsa-mir-596 ; hsa-mir-6807-5p ; hsa-mir-5682 ; hsa-mir-658 ; hsa-mir-6499-3p ; hsa-mir-6871-3p ; hsa-mir-4459 ; hsa-mir-29c-3p ; hsa-mir-29b-3p ; hsa-mir-29a-3p ; hsa-mir-4662a-3p ; hsa-mir-6883-3p ; hsa-mir-197-3p ; hsa-mir-891a-3p ; hsa-mir-5681a ; hsa-mir-454-5p ; hsa-mir-4733-3p ; hsa-mir-1226-3p ; hsa-mir-6732-5p ; hsa-mir-7-2-3p ; hsa-mir-7-1-3p ; hsa-mir-4422 ; hsa-mir-5688 ; hsa-mir-495-3p ; hsa-mir-330-3p ; hsa-mir-3160-3p ; hsa-mir-363-5p ; hsa-mir-4447 ; hsa-mir-4472 ; hsa-mir-4487 ; hsa-mir-4651 ; hsa-mir-5186 ; hsa-mir-558 ; hsa-mir-608 ; hsa-mir-6745 ; hsa-mir-6752-5p ; hsa-mir-6756-5p ; hsa-mir-6766-5p ; hsa-mir-6842-5p ; hsa-mir-7110-5p ; hsa-mir-92a-2-5p ; hsa-mir-1273h-5p ; hsa-mir-30b-3p ; hsa-mir-30c-1-3p ; hsa-mir-30c-2-3p ; hsa-mir-3122 ; hsa-mir-3672 ; hsa-mir-3689a-3p ; hsa-mir-3689b-3p ; hsa-mir-3689c ; hsa-mir-3913-5p ; hsa-mir-4329 ; hsa-mir-4433a-3p ; hsa-mir-4461 ; hsa-mir-450a-1-3p ; hsa-mir-4524a-3p ; hsa-mir-4767 ; hsa-mir-4768-3p ; hsa-mir-4793-3p ; hsa-mir-6513-5p ; hsa-mir-6779-5p ; hsa-mir-6780a-5p ; hsa-mir-6788-5p ; hsa-mir-6799-5p ; hsa-mir-6864-3p ; hsa-mir-6888-5p ; hsa-mir-7106-5p ; hsa-mir-769-5p ; hsa-mir-887-5p

Nearest miRNA

hsa-let-7g/Upstream/329421; hsa-mir-1224/Downstream/95817;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/14725, chr3-CpG: 102/Downstream/6962

Upstream sequence

CACTGTCCTGGTCTCCCCTGCTCCTTTTCCACCTGTCACAACTTTTTCCAACCTTCACGGGCCAACTCAAATGCCAACTCTATAAAAGAATCTGACTACA

Downstream sequence

TCTCCCAGCCTGGAACTACCCTCCCTATTAAGTCCCAAGACACTTTGTTAATATCTGTCTAATGGCAGTACCATATTGCCTTGTATCATATtccttgaag