VISDB Viral Integration Site DataBase

VIS ID

TVIS30003573

Fusion event

HIV-TMCC1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr3

Cytoband

q22.1

Reference genome

Start

End

129536372/129817529 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-1-3p ; hsa-mir-103a-3p ; hsa-mir-16-5p ; hsa-mir-7856-5p ; hsa-mir-548c-3p ; hsa-mir-8081 ; hsa-mir-6869-5p ; hsa-mir-6828-5p ; hsa-mir-4693-3p ; hsa-mir-6504-3p ; hsa-mir-6761-5p ; hsa-mir-496 ; hsa-mir-181c-5p ; hsa-mir-181b-5p ; hsa-mir-181a-5p ; hsa-mir-4262 ; hsa-mir-181d-5p ; hsa-mir-6892-5p ; hsa-mir-3149 ; hsa-mir-3713 ; hsa-mir-486-3p ; hsa-mir-6721-5p ; hsa-mir-4736 ; hsa-mir-657 ; hsa-mir-4761-5p ; hsa-mir-6743-5p ; hsa-mir-4688 ; hsa-mir-3936 ; hsa-mir-3680-3p ; hsa-mir-3658 ; hsa-mir-640 ; hsa-mir-548v ; hsa-mir-187-5p ; hsa-mir-6814-5p ; hsa-mir-6830-5p ; hsa-mir-4733-5p ; hsa-mir-3169 ; hsa-mir-651-3p ; hsa-mir-3662 ; hsa-mir-4676-3p ; hsa-mir-452-5p ; hsa-mir-892c-3p ; hsa-mir-324-5p ; hsa-mir-222-3p ; hsa-mir-221-3p ; hsa-mir-26a-5p ; hsa-mir-26b-5p

Nearest miRNA

hsa-let-7g/Upstream/545286; hsa-mir-1224/Downstream/2168326;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/189851, chr3-CpG: 116/Downstream/75548

Upstream sequence

caaagaaagaccctgtcttaaTCAATTAATAATATCTGTGAACTTTAAGATCATGAAATTACCAAATCAAAAAATCTGACAGAAAAGAATATTTACTATC

Downstream sequence

TTATTATCCAAAGGGAAATAAATTGCTAACAAGAATTTCTTCCTTCTAGGCCCTTAGAGACTATCCCACATCTTCATATTTTGATTTTCAGAGTGGCTGA