Basic Information
VIS ID
TVIS30003574
Fusion event
HIV-NPHP3-ACAD11 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
132396937/132678093 (Hg38)
End
132396937/132678093 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
NPHP3-ACAD11
Nearest miRNA
hsa-let-7g/Upstream/692162; hsa-mir-1224/Downstream/1689711;
Nearest TSS
ENST00000440867/Upstream/2711; ENST00000489343/Downstream/6592;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/17294, chr3-CpG: 57/Downstream/43776
Upstream sequence
ATTTAAAAAATGAAATGCAGTTTTTCAAAAATAAATTTCCTTTGGAAATTCTTGCATATCAATTTAGTAAGGTTTTATAAAATTTTACAATTTGATAAAG
Downstream sequence
TATCACATCTAGAATTCACTGTCTTCTTTTATCTGCTCTCAAGTTGGCATTGCATCACTGCCTGTGTCTTACACTGCACCAAATGTTACCTAATTGACCT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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